FRC differentiation during lymph node development
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Processing and characterization adult FRC
Merge all samples
examine adult mLN only
label and characterize adult mLN
examine adult iLN only
filter adult iLN
label and characterize adult iLN
merge and charaterize adult mLN plus iLN
integrate data from adult mLN and iLN
characterization adult mLN
DE genes adult mLN vs iLN
FRC differentiation
chracterize mLN all timepoints WT plus Ltbr floxed
run trajectory analysis mLN all timepoints
run TradeSeq mLN
summarize and vis tradeSeq output - mLN all timepoints
run decoupleR on mLN all timepoints
DE genes mLN WT versus Ltbr floxed
chracterize iLN all timepoints WT plus Ltbr floxed
DE genes iLN WT versus Ltbr floxed
Source Code
FRC differentiation in murine lymph nodes
Analysis of FRC differentiation during lymph node development