Last updated: 2024-01-13
Checks: 1 1
Knit directory: humanCardiacFibroblasts/
This reproducible R Markdown analysis was created with workflowr (version 1.7.1). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.
The R Markdown file has unstaged changes. To know which version of
the R Markdown file created these results, you’ll want to first commit
it to the Git repo. If you’re still working on the analysis, you can
ignore this warning. When you’re finished, you can run
wflow_publish to commit the R Markdown file and build the
HTML.
Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
The results in this page were generated with repository version 9a59429. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.
Note that you need to be careful to ensure that all relevant files for
the analysis have been committed to Git prior to generating the results
(you can use wflow_publish or
wflow_git_commit). workflowr only checks the R Markdown
file, but you know if there are other scripts or data files that it
depends on. Below is the status of the Git repository when the results
were generated:
Ignored files:
Ignored: .DS_Store
Ignored: .Rhistory
Ignored: .Rproj.user/
Ignored: data/GSEA/
Ignored: data/browser/
Ignored: data/figshare/
Ignored: data/grantApplication/
Ignored: data/humanFibroblast/
Ignored: figure/DEgenesGZplusSG_Groups.Rmd/.DS_Store
Unstaged changes:
Modified: analysis/index.Rmd
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
These are the previous versions of the repository in which changes were
made to the R Markdown (analysis/index.Rmd) and HTML
(docs/index.html) files. If you’ve configured a remote Git
repository (see ?wflow_git_remote), click on the hyperlinks
in the table below to view the files as they were in that past version.
| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | 66c2208 | mluetge | 2022-12-08 | compare T cell groups and project gene signatures |
| html | 66c2208 | mluetge | 2022-12-08 | compare T cell groups and project gene signatures |
| Rmd | e469ce4 | mluetge | 2022-11-29 | add samples with Htrans |
| html | e469ce4 | mluetge | 2022-11-29 | add samples with Htrans |
| html | be40cdd | mluetge | 2022-10-13 | Update index.html |
| html | 8504490 | mluetge | 2022-09-28 | update index |
| Rmd | 11687dc | mluetge | 2022-09-28 | update index |
| html | 11687dc | mluetge | 2022-09-28 | update index |
| Rmd | 9b017be | mluetge | 2022-07-27 | plots for only HH and HT |
| html | 9b017be | mluetge | 2022-07-27 | plots for only HH and HT |
| Rmd | c5d06fc | mluetge | 2022-07-22 | vis sel DE genes groups |
| html | c5d06fc | mluetge | 2022-07-22 | vis sel DE genes groups |
| Rmd | 02765dc | mluetge | 2022-07-19 | GSEA across diff groups |
| html | 02765dc | mluetge | 2022-07-19 | GSEA across diff groups |
| Rmd | 3e98bf3 | mluetge | 2022-07-15 | run DE genes HH vs Myo |
| html | 3e98bf3 | mluetge | 2022-07-15 | run DE genes HH vs Myo |
| Rmd | 141fae8 | mluetge | 2022-07-06 | assign labels |
| html | 141fae8 | mluetge | 2022-07-06 | assign labels |
| Rmd | d9e1a98 | mluetge | 2022-07-04 | integrate samples Graz |
| html | d9e1a98 | mluetge | 2022-07-04 | integrate samples Graz |
| Rmd | 9fc92e5 | mluetge | 2022-06-23 | add samples from Graz |
| html | 9fc92e5 | mluetge | 2022-06-23 | add samples from Graz |
| Rmd | 70e878c | mluetge | 2022-05-02 | update grand application plots |
| html | 70e878c | mluetge | 2022-05-02 | update grand application plots |
| Rmd | 004eedd | mluetge | 2022-04-29 | vis data for grand app |
| html | 004eedd | mluetge | 2022-04-29 | vis data for grand app |
| Rmd | affdfcb | mluetge | 2021-11-11 | add cw DE henes idcm |
| html | affdfcb | mluetge | 2021-11-11 | add cw DE henes idcm |
| html | 8706140 | mluetge | 2021-09-03 | Update index.html |
| Rmd | cf82798 | mluetge | 2021-09-03 | first merge |
| html | cf82798 | mluetge | 2021-09-03 | first merge |
| html | e2b9497 | mluetge | 2021-09-03 | initial commit |
| Rmd | b27bc0d | mluetge | 2021-09-03 | Start workflowr project. |