Human lymph node
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Stromal cells
Merge human LN stromal cells
visualize data human LN without CD patients
visualize marker genes all stromal cells
visualize marker human LN
Subset FRCs and VSMCs human LN
Subset LECs human LN
Subset BECs human lymph nodes
visualize marker genes LECs
visualize BEC marker human LN
visualize marker genes FRC subsets
Correlation analysis gene expression FRCs
visualize marker genes FRCs - resting LN only
visualize DE genes FRCs
DE genes FRCs resting versus activated human LN
visualize DE genes Pi16+RC human LN
Immune cells
Merge human LN imm cells
Integrate human LN immune cells
characterize immune cells human LN
visualize resting immune cells human LN
visualize activated immune cells human LN
Cellchat analysis
run cellchat scRNAseq data human LN
run cellchat scRNAseq data on PI16+RC
Spatial transcriptomics
merge ST data human LN - batch 1
merge ST data human LN - batch2
Run spatalk decomposition - s4 batch1
Run spatalk decomposition - s2 batch2
Run spatalk decomposition - s4 batch2
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Analysis human lymph node FRCs